Browsing Biological Sciences by Author "Matsheka, M.I."
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Omari, K.; Mubyana, T.; Matsheka, M.I.; Bonyongo, M.C.; Veenendaal, E. (South African Journal of Botany http://www.elsevier.com/wps/find/journaldescription.cws_home/707238/description#description, NaN, 2004)[more][less]
Abstract: Effects of flooding on soil nitrogen (N), and asymbiotic nitrogen fixing bacterial (diazotroph) populations of the Okavango Delta were investigated. Diazotrophs from the rhizosphere of dominant annual and perennial grasses of the Okavango Delta were isolated on N-free composite media and identified applying morphological and biochemical criteria and Restriction Fragment Length Polymorphism (RFLP). Azotobacter species were found associated mostly with the grasses Andropogon guyanus and Vetevaria nigritiana (103CFU g–1 rhizosphere soil). Annual grasses such as Eragrostis inamoena, Setaria sphacelata as well as perennials showed insignificant populations (<101CFU g–1 soil). On the contrary, Azospirillum spp. was found associated with most of the grasses. Highest population densities (above 104MPN g–1 soil) were observed in rhizospheres of E. inamoena, Cympogon excavatus, Sporobolus acinifolis, Eragrostis lapila and Eragrostis rigidor and lowest population densities (below 102MPN g–1 soil) in rhizospheres of Andropogon guyanus and Panicum repens. Flooding increased the Azotobacter populations, while Azospirillum spp. populations were significantly reduced. Nitrogen-fixing sulphur reducers were observed in the rhizosphere of annuals (A. guyanus and P. repens) and only in perennials growing in flooded soils. No Beijerinckia species were found associated with any of the grasses. The highest soil nitrogen levels were detected in flooded soils (<0.20% N) while no N was detected in the rhizosphere soil of grasses growing in very dry soils (<5% moisture content). The results indicate that in the Okavango Delta, total soil nitrogen varies with flooding regime. With flooding, the diazotroph population shifts towards Azotobacter and Nfixing sulphur reducers while Azospirillum spp. are widespread in non-flooded soils. RFLP analysis of the 1 450bp amplicon using the restriction endonuclease Alu1, showed three different banding profiles, suggesting the occurrence of three different species of Azospirillum. URI: http://hdl.handle.net/10311/294 Files in this item: 1
Flooding and its influence.pdf (2.253Mb) -
Baloi, B.; Matsheka, M.I.; Gashe, B.A. (Global Science Books, http://www.globalsciencebooks.info/, NaN, 2011)[more][less]
Abstract: Halophilic bacteria from the Makgadikgadi salt pans in north central Botswana were isolated using culture-dependent methods. Polymerase chain reaction (PCR) amplification of the 16S rRNA gene and phylogenetic analysis were used to identify the strains. Culturing was done aerobically in six different complex salt media. Salt concentrations used were 1Halophilic bacteria from the Makgadikgadi salt pans in north central Botswana were isolated using culture-dependent methods. Polymerase chain reaction (PCR) amplification of the 16S rRNA gene and phylogenetic analysis were used to identify the strains. Culturing was done aerobically in six different complex salt media. Salt concentrations used were 15, 20, 25 and 30% (2.6, 3.4, 4.3 and 5.1 M, respectively) NaC1, at pH 7.2 to pH 8.0. Four colony morphology types were isolated in axenic cultures comprising Gram-positive cells. Universal bacterila primers were used to amplify 16S rDNA from chromosomal DNA isolated from three of the four distinct colony groups. Restriction enzyme digest analysis of the 16S rDNA revealed seven RFLP types. Five of the RFLP types were subjected to sequencing. Comparison of the 16S rDNA sequence alignment to reference sequence data bases showed samples S2012A3, S2012B2 and S2012B3 to have between 95 and 99% homology to Bacillus sp. BH 164 and Bacillus sp. HS 136T, a novel species recently described as Bacillus persepolensis. Isolate S4102D4 showed 95 to 99% homology to Thalassobacillus sp. JY0201 and Thalassobacillus sp. FIB228 and Halobacillus sp. MO56 species. All five isolates had at least 95% similarity to published sequences implying they could be species within the described genera. A sub-tree drawn to compare the isolates indicated two phyletic lines with S4102D4 being an outlying strain and S2012A3, S2012B and S2012B3 being a closely related clonal group all of which branch from Bacillus sp. BH 164. Pending conclusive culture, biochemical and polar lipid composition data these microorganisms are regarded as previously un-described and therefore novel species of halophilic bacteria. URI: http://hdl.handle.net/10311/920 Files in this item: 1
Matsheka_AJPSB_2011.pdf (525.8Kb) -
Matsheka, M.I.; Lastovica, A.J.; Elisha, B.G. (American Society for Microbiology. http://jcm.asm.org/, NaN, 2001)[more][less]
Abstract: A 1.6-kb DNA fragment isolated from a Campylobacter concisus genomic library gave C. concisus-specific restriction fragment length patterns when it was used as a probe in hybridization studies. All of the strains tested, including type strains and clinical isolates, contained a 0.5-kb HindIII fragment that hybridized to the probe. DNA sequencing of the 1.6-kb fragment identified three open reading frames (ORFs). One of the ORFs encodes the carboxy terminus of GyrB, and the translational products of ORF2 and ORF3 showed similarity to hypothetical proteins, previously identified in Campylobacter jejuni. DNA-DNA hybridization studies with a fragment internal to ORF3 showed that this sequence was responsible for the signal observed with the 0.5-kb HindIII fragment. A rapid PCR assay was developed and evaluated. Primers that annealed to the extremities of the 1.6-kb fragment were used to obtain an amplicon of the correct size from both reference and clinical strains of C. concisus. URI: http://hdl.handle.net/10311/306 Files in this item: 1
Molecular identification of.pdf (4.701Mb) -
Morobe, I.C.; Obi, C.L.; Nyila, M.A.; Gashe, B.A.; Matsheka, M.I. (Academic Journals, http://www.academicjournals.org/AJB, NaN, 2009)[more][less]
Abstract: Listeria monocytogenes is known to cause epidemic and sporadic cases of listeriosis. The present study investigated the occurrence, antibiograms and molecular serotypes of the organism in various retail outlets in Gaborone, Botswana. Food samples were obtained randomly from selected supermarkets and street vendors in 5 geographical areas of Gaborone from May, 2007 to September 2007. L. monocytogenes was isolated and positively identified by using morphological and biochemical tests. From a total of 1324 food samples tested 57(4.3 %) were positive for L. monocytogenes. Out of the 57 isolates of L. monocytogenes 7 (12.3%), 3 (5.3%), 0 (0%), 27 (47.4%) and 20 (35.1%) were isolated from cheese, raw milk, meat (biltong), frozen cabbage and salad (coleslaw), respectively. From the 5 geographical areas selected for sampling in this study, Gaborone South recorded the highest number 19 (33.3%) of L. monocytogenes isolates while Gaborone West recorded the least, 7 (12.3%). The findings in this study reveal the presence of L. monocytogenes serotypes 1/2a and 1/2b in ready to eat food and highlight the need for education and training programmes in food safety in Gaborone, Botswana. URI: http://hdl.handle.net/10311/996 Files in this item: 1
Morobe_AJB_2009.pdf (86.64Kb)
Now showing items 1-4 of 4